PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000894463
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 243aa    MW: 26338.1 Da    PI: 9.2893
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000894463genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.6e-183479147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd  l ++v ++G+++W++I+r++  gR++k+c++rw + 
    MDP0000894463 34 KGPWSAEEDRVLTQLVDRYGPRNWSLISRYIK-GRSGKSCRLRWCNQ 79
                     79*****************************9.***********985 PP

2Myb_DNA-binding53.36.1e-1788130347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++++ Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ 
    MDP0000894463  88 PFSQAEDETILAAHARFGNR-WATIARLLP-GRTDNAVKNHWNST 130
                      79******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.3182984IPR017930Myb domain
SuperFamilySSF466896.47E-3131127IPR009057Homeodomain-like
SMARTSM007173.0E-153382IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-243587IPR009057Homeodomain-like
CDDcd001678.58E-143678No hitNo description
PfamPF139216.4E-173795No hitNo description
PROSITE profilePS5129420.59785135IPR017930Myb domain
SMARTSM007171.8E-1485133IPR001005SANT/Myb domain
CDDcd001675.58E-1188131No hitNo description
Gene3DG3DSA:1.10.10.601.0E-2288134IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MEAMNMCSSS TSSSGTSSSE SSLRRNPNKP ERIKGPWSAE EDRVLTQLVD RYGPRNWSLI  60
SRYIKGRSGK SCRLRWCNQL SPSVQHRPFS QAEDETILAA HARFGNRWAT IARLLPGRTD  120
NAVKNHWNST LKRRVRGDQL TEGGSFGGGG GGNVSSNEGM STSSVSGSLA NGSMEFDPLT  180
ELTLAPPGIG SGSGGAMVGE QQRNNESVPS GFWDAMRDVI AREVRDYVAT TFSEPSELHR  240
LN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-443013554159MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-443013554159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.268600.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008378059.11e-178PREDICTED: transcriptional activator Myb-like
TrEMBLM5XHQ51e-127M5XHQ5_PRUPE; Uncharacterized protein
STRINGPOPTR_0002s13030.18e-95(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50743256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-57myb domain protein 73